Services |
Inputs |
Minimum Volume/Concentration |
Sample types |
|
Outputs |
Whole Transcriptome Sequencing: 50 million or 100 million reads aligned in pairs |
≥800 ng total; 50–300 µL volume 10–110 ng/µL concentration preferred, 6.5 ng/µL minimum acceptable concentration; RQS>5.5 required, RQS>7 preferred, |
PAXgene preserved whole blood, fresh frozen tissue, and cell pellet also accepted |
CRAM file |
Total RNA Sequencing: 50, 100, and 200 million reads aligned in pairs |
- ≥500 ng total in 50–300 μL volume, 30 ng/μL
concentration
- Minimum 24 samples/batch
- A260/230>1.3
- RIN>3.5 required
|
PAXGene whole blood, or purified RNA derived from
whole blood or fresh frozen tissue |
CRAM file aligned to human genome assembly (HG38) |
Transcriptome Capture: 50 million reads aligned in pairs |
≥1 µg in 50–300 µL, 85–110 ng/µL concentration, DV200 scores>30%
|
Purified total RNA that is FFPE derived or low quality; other sample types available for processing (blood, stool, cell pellets) |
STAR genome aligned BAM (HG19 or HG38), STAR transcriptome aligned BAM (HG19 or HG38) |