Research Blended Genome-Exome Sequencing

Achieve unbiased genome-wide coverage with exome depth in one cost-effective assay, designed to scale.

Comprehensive Genomic Insights with Blended Sequencing Solutions

Traditional genomic analysis approaches force difficult trade-offs: genotyping arrays offer cost-effectiveness but introduce bias and limited coverage, while whole exome sequencing provides coverage depth but can miss intronic variants. Broad Clinical Labs’ Research Blended Genome-Exome Sequencing (BGE) overcomes these challenges with an innovative single-sample methodology that combines low-pass whole genome sequencing (WGS) and deeper coverage whole exome sequencing (WES) that drives unbiased discovery in population genomics—

starting at just $120 per sample.

Blended Genome-Exome Sequencing Diagram
Blended Genome-Exome Sequencing diagram

Blended Genome Exome
both data types delivered in one CRAM file

Blended Genome-Exome Sequencing Methodology

Drawing upon decades of leadership in methods development, Broad Clinical Labs has developed this distinctive blended approach to empower more insightful, less biased research studies.

Transform Population Genomics with High-Sensitivity Genome-Exome Analysis

Affordable Comprehensive Genomics from One Sample

Obtain genome-wide variant detection and targeted coding region depth from a single sample, eliminating the need for separate WGS and WES studies. BGE provides unified data generation for both population-level insights and rare variant discovery without the budget impact of running multiple platforms.

Superior Global Coverage with Precision

Benefit from enhanced imputation accuracy with reduced population-specific variant bias. Our platform simultaneously achieves exceptional sensitivity and precision for both SNP and Indel variant detection within exome regions.

Scalable Throughput and Reliable Results

From pilot studies to population-level initiatives, our infrastructure scales to 500,000+ samples annually with consistent quality and performance. This high-throughput capacity maintains the reproducibility and data standards essential for impactful research.

End-to-End Support from Genomics Leaders

All sequencing is performed in our CLIA-licensed and CAP-accredited facility with comprehensive end-to-end services including sequencing, analysis, and data delivery. Benefit from 30+ years of genomics expertise and proven methodology that provides reliable data.

Research Applications

Drive breakthrough discoveries in genomic research with our innovative blended genome-exome sequencing platform.

Population Genomics

Disease Genetics

Translational Research

Research Blended Genome-Exome Sequencing with Broad Clinical Labs

Service or tier/type Data Deliverables What’s Included

Research Blended Genome-Exome Sequencing on Illumina® NovaSeq X Plus

Genome coverage: 1–3x
Exome coverage: 30–40x

  • CRAM file (aligned to HG38)
  • Exome single sample VCF; Exome gVCF
  • Copy Number Variation (CNV) VCF
  • Concatenated VCF (merged VCF files with small variants and CNV calls)
  • Sample receipt & fidelity QC
  • From a single sample a PCR-free whole genome library is constructed, and an aliquot is taken through PCR amplification and exome selection
  • Libraries are recombined and sequenced
  • All samples are processed in Broad Clinical Labs’ CLIA-certified/CAP-accredited laboratory


Research Blended Genome-Exome Sequencing Plus on Illumina® NovaSeq X Plus

Genome coverage: 1–3x
Exome coverage: ≥60x

  • CRAM file (aligned to HG38)
  • Exome single sample VCF; Exome gVCF
  • Copy Number Variation (CNV) VCF
  • Concatenated VCF (merged VCF files with small variants and CNV calls)
  • Sample receipt & fidelity QC
  • From a single sample a PCR-free whole genome library is constructed, and an aliquot is taken through PCR amplification and exome selection
  • Libraries are recombined and sequenced
  • All samples are processed in Broad Clinical Labs’ CLIA-certified/CAP-accredited laboratory

Discover how our cost-effective blended genome-exome approach achieves >99% concordance with deep WGS while requiring ten-fold less sequencing in this groundbreaking research study.

Blended Genome-Exome article thumbnail

Project Workflow: Blended Genome-Exome Sequencing

Project onboarding

Project onboarding
(contracting if required)

Regulatory Review
Quoting
Sample Kits

Sample intake and QC

Sample intake and QC
(extraction optional)

Inputs:
DNA
Whole blood
Saliva
Cell pellet/ suspension
Buccal swab
Buffy coat

Library Receipt at BCL

Library construction

One sample generates a whole exome and PCR-free whole genome library

The two libraries are pooled together to hit target coverage levels

Sequencing

Sequencing

Sequencing on Illumina® NovaSeq X Plus

Data delivery

Data and report delivery
(bioinformatic analysis optional)

Data delivered via secure cloud-based platform

Project onboarding

Project onboarding
(contracting if required)

Regulatory Review
Quoting
Sample Kits

Sample intake and QC

Sample intake and QC
(extraction optional)

Inputs:
DNA
Whole blood
Saliva
Cell pellet/suspension
Buccal swab
Buffy coat

Library Receipt at BCL

Library construction

One sample generates a whole exome and PCR-free whole genome library

The two libraries are pooled together to hit target coverage levels

Sequencing

Sequencing

Sequencing on Illumina® NovaSeq X Plus

Data delivery

Data and report delivery
(bioinformatic analysis optional)

Data delivered via secure cloud-based platform

Reach out to our specialists today to get started on your Research Blended Genome-Exome project.

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